chore(misc): JOSE paper (#144)

* chore(misc): JOSE paper

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* fix(ci): update path

* fix(ci): tab error

* fix(ci): path to paper

* fix(paper): updates

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* fix(paper): typos

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.github/workflows/draft-pdf.yml

@@ -0,0 +1,33 @@
+# Simple workflow for deploying static content to GitHub Pages
+name: Create JOSE Paper
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    paths:
+    - paper/*
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: Paper Draft
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+    - name: Build draft PDF
+      uses: openjournals/openjournals-draft-action@master
+      with:
+        journal: jose
+          # This should be the path to the paper within your repo.
+        paper-path: paper/paper.md
+    - name: Upload
+      uses: actions/upload-artifact@v1
+      with:
+        name: paper
+        # This is the output path where Pandoc will write the compiled
+        # PDF. Note, this should be the same directory as the input
+        # paper.md
+        path: paper/paper.pdf

.gitignore

@@ -35,3 +35,9 @@ docs/source/_static/basic_example.html
 docs/source/_static/three_d_example.html
 
 docs/source/_static/three_d_example_assets/
+
+paper/media/
+
+*.jats
+
+paper/paper.pdf

paper/paper.bib

@@ -0,0 +1,53 @@
+@online{manim-announcement,
+  author = {Grant Sanderson},
+  title = {{Q}\&{A} with {G}rant {S}anderson (3blue1brown)},
+  year = {2018},
+  organization = {YouTube},
+  url = {https://www.youtube.com/watch?v=Qe6o9j4IjTo\&ab_channel=3Blue1Brown}
+}
+
+@misc{revealjs,
+  author = {Hakim El Hattab},
+  title = {The HTML Presentation Framework},
+  year = {2022},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/hakimel/reveal.js}
+}
+
+@misc{manim-presentation,
+  author = {Federico Galatolo},
+  title = {Tool for live presentations using manim},
+  year = {2021},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/galatolofederico/manim-presentation}
+}
+
+@misc{manimgl,
+  author = {Grant Sanderson},
+  title = {Animation engine for explanatory math videos},
+  year = {2022},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/3b1b/manim}
+}
+
+@misc{manim-editor,
+  author = {Christopher Besch},
+  title = {Web Presenter for Mathematical Animations using Manim},
+  year = {2022},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/ManimCommunity/manim_editor}
+}
+
+@software{manimce,
+  author = {{The Manim Community Developers}},
+  license = {MIT},
+  month = {12},
+  title = {{Manim – Mathematical Animation Framework}},
+  url = {https://www.manim.community/},
+  version = {v0.17.2},
+  year = {2022}
+}

paper/paper.md

@@ -0,0 +1,125 @@
+---
+title: 'Manim Slides: A Python package for presenting Manim content anywhere'
+tags:
+  - Python
+  - manim
+  - animations
+  - teaching
+  - conference presentations
+  - tool
+authors:
+  - name: Jérome Eertmans
+    orcid: 0000-0002-5579-5360
+    affiliation: 1
+affiliations:
+ - name: ICTEAM, UCLouvain, Belgium
+   index: 1
+date: 2 March 2023
+bibliography: paper.bib
+---
+
+# Summary
+
+Manim Slides is a Python package that makes presenting Manim animations
+straightforward. With minimal changes required to pre-existing code, one can
+slide through animations in a *PowerPoint-like* manner, or share its slides
+*online* using ReavealJS' power.
+
+# Introduction
+
+Presenting educational content has always been a difficult task, especially
+when it uses temporal or iterative concepts. During the last decades, the
+presence of computers in classrooms for educational purposes has increased
+enormously, allowing teachers to show animated or interactive content.
+
+With the democratization of YouTube, many people have decided to use this
+platform to share educational content. Among these people, Grant Sanderson, a
+YouTuber presenting videos on the theme of mathematics, quickly became known
+for his original and quality animations. In 2018, Grant announced in a video
+that he creates his animations using a self-developed Python tool called Manim
+[@manim-announcement]. In 2019, he made the Manim source code public [@manimgl],
+so anyone can use his tool. Very quickly, the community came together and, in
+2020, created a "fork" of the original GitHub repository [@manimce], in order to
+create a more accessible and better documented version of this tool. Since then,
+the two versions are differentiated by using ManimGL for Grant Sanderson's
+version, as it uses OpenGL for rendering, and ManimCE for the community edition
+(CE).
+
+Despite the many advantages of the Manim tool in terms of illustrating
+mathematical concepts, one cannot help but notice that most presentations,
+whether in the classroom or at a conference, are mainly done with PowerPoint
+or PDF slides. One of the many advantages of these formats, as opposed to videos
+created with Manim, is the ability to pause, rewind, etc., whenever you want.
+
+To face this problem, in 2021, the manim-presentation tool was created
+[@manim-presentation]. This tool allows you to present Manim animations as you
+would present slides: with pauses, slide jumps, etc. However, this tool has
+evolved very little since its inception and does not work with ManimGL.
+
+In 2022, Manim Slides has been created from manim-presentation, with the aim
+to make it a more complete tool, better documented, and usable on all platforms
+and with ManimCE or ManimGL. After almost a year of existence, Manim Slides has
+evolved a lot, has built a small community of contributors, and continues to
+provide new features on a regular basis.
+
+# Easy to Use Commitment
+
+Manim Slides is commited to be an easy-to-use tool, when minimal installation
+procedure and few modifications required. It can either be used locally with its
+graphical user interface (GUI), or shared via HTML thanks to the RevealJS
+Javascript package [@revealjs].
+
+This work has a very similar syntax to Manim and offers a comprehensive
+documentation hosted on [GitHub pages](https://eertmans.be/manim-slides/), see
+\autoref{fig:docs}.
+
+![Manim Slides' documentation homepage.\label{fig:docs}](docs.png)
+
+# Example usage
+
+We have used manim-presentation for our presentation at the COST
+Interact, hosted in Lyon, 2022, and
+[available online](https://eertmans.be/research/cost-interact-presentation/).
+This experience highly motivated the development of Manim Slides, and our
+EuCAP 2023 presentation slides are already
+[available online](https://eertmans.be/research/eucap-presentation/), thanks
+to Manim Slides' HTML feature.
+
+Also, one of our users created a short
+[video tutorial](https://www.youtube.com/watch?v=Oc9g89VzKsY&ab_channel=TheoremofBeethoven)
+and posted it on YouTube.
+
+# Stability and releases
+
+Manim Slides is continously tested on most recent Python versions, both ManimCE
+and ManimGL, and on all major platforms: **Ubuntu**, **macOS** and **Windows**. As of Manim
+Slide's exposed API begin very minimal, and the variaty of tests that are
+performed, this tool can be considered stable over time.
+
+New releases are very frequent, as they mostly introduce enhancements or small
+documention fixes, and the command-line tool automatically notifies for new
+available updates. Therefore, regularly updating Manim Slides is highly
+recommended.
+
+# Statement of Need
+
+Similar tools to Manim Slides also exist, such as its predecessor,
+manim-presentation [@manim-presentation], or the web-based alternative, Manim
+Editor [@manim-editor], but none of them provide the documentation level nor the
+amount of features that Manim Slides strives to. This work makes the task of
+presenting Manim content in front of an audience much easier than before,
+allowing presenters to focus more on the content of their slides, rather than on
+how to actually present them efficiently.
+
+# Acknowledgements
+
+We acknowledge the work of [@manim-presentation] that paved the initial structure
+of Manim Slides with the `manim-presentation` Python package.
+
+We also acknowledge Grant Sanderson for its termendous work on Manim, as well as
+well as the Manim Community contributors.
+
+Finally, we also acknowledge contributions from the GitHub contributors on the
+Manim Slides repository.
+
+# References