diff --git a/project/project.go b/project/project.go
index 3c30a08..0926b2c 100644
--- a/project/project.go
+++ b/project/project.go
@@ -356,7 +356,12 @@ func applyPullRequestsOverride(c config.Config, modules []Module) []Module {
 				continue
 			}
 
-			if strings.Contains(module.Repository, prRepo) {
+			repoUrl, err := utils.ParseGitHubURL(module.Repository)
+			if err != nil {
+				logger.Error("couldn't parse repository URL: %v", err)
+			}
+
+			if repoUrl.Matches(prRepo) {
 				logger.Debug("Checking out pull-request %s for module %s", pullRequest, module.Name)
 
 				module.Revision = fmt.Sprintf("pull-request/%d", prNumber)
diff --git a/utils/github.go b/utils/github.go
index 111f56f..e2afd0e 100644
--- a/utils/github.go
+++ b/utils/github.go
@@ -68,6 +68,11 @@ func (url GitHubURL) Directory() string {
 	return strings.TrimSuffix(filepath.Base(url.Repository), filepath.Ext(url.Repository))
 }
 
+func (url GitHubURL) Matches(match string) bool {
+	repoName := strings.TrimSuffix(url.Repository, filepath.Ext(url.Repository))
+	return strings.Compare(strings.ToLower(repoName), strings.ToLower(match)) == 0
+}
+
 func (url GitHubURL) String() string {
 	return "github://" + url.Repository
 }
diff --git a/utils/github_test.go b/utils/github_test.go
index 778a556..f90f4a2 100644
--- a/utils/github_test.go
+++ b/utils/github_test.go
@@ -53,6 +53,27 @@ func TestParseGitHubURL(t *testing.T) {
 		t.Errorf("expected <%s> but got <%s>", expected, url.HTTPS())
 	}
 
+	// Matches ok
+	url, _ = ParseGitHubURL("https://github.com/Graylog2/graylog2-server.git")
+	match := "Graylog2/graylog2-server"
+	if !url.Matches(match) {
+		t.Errorf("expected <%s> to match <%s>", url, match)
+	}
+
+	// Matches case
+	url, _ = ParseGitHubURL("https://github.com/Graylog2/graylog2-server.git")
+	match = "GraYloG2/GraYlog2-SErver"
+	if !url.Matches(match) {
+		t.Errorf("expected <%s> to match <%s>", url, match)
+	}
+
+	// Match fails
+	url, _ = ParseGitHubURL("https://github.com/Graylog2/graylog2-server.git")
+	match = "Graylog2/graylog2-server-does-not-work"
+	if url.Matches(match) {
+		t.Errorf("expected <%s> to not match <%s>", url, match)
+	}
+
 	// Missing .git suffix
 	_, err = ParseGitHubURL("https://github.com/Graylog2/graylog2-server")
 	if err == nil {