Files
grafana/pkg/tsdb/postgres/postgres.go
Marcus Efraimsson 66c03f84f5 postgres: fix precision for the time column in table/annotation query mode
Use the ConvertSqlTimeColumnToEpochMs function to convert any native
datetime data type or epoch time (millisecond precision).
Additional tests and update of existing due to timezone issues
running postgres on UTC and dev environment on non-utc.
Added test dashboard.
2018-03-22 15:32:33 +01:00

314 lines
8.2 KiB
Go

package postgres
import (
"container/list"
"context"
"fmt"
"math"
"net/url"
"strconv"
"time"
"github.com/go-xorm/core"
"github.com/grafana/grafana/pkg/components/null"
"github.com/grafana/grafana/pkg/log"
"github.com/grafana/grafana/pkg/models"
"github.com/grafana/grafana/pkg/tsdb"
)
type PostgresQueryEndpoint struct {
sqlEngine tsdb.SqlEngine
log log.Logger
}
func init() {
tsdb.RegisterTsdbQueryEndpoint("postgres", NewPostgresQueryEndpoint)
}
func NewPostgresQueryEndpoint(datasource *models.DataSource) (tsdb.TsdbQueryEndpoint, error) {
endpoint := &PostgresQueryEndpoint{
log: log.New("tsdb.postgres"),
}
endpoint.sqlEngine = &tsdb.DefaultSqlEngine{
MacroEngine: NewPostgresMacroEngine(),
}
cnnstr := generateConnectionString(datasource)
endpoint.log.Debug("getEngine", "connection", cnnstr)
if err := endpoint.sqlEngine.InitEngine("postgres", datasource, cnnstr); err != nil {
return nil, err
}
return endpoint, nil
}
func generateConnectionString(datasource *models.DataSource) string {
password := ""
for key, value := range datasource.SecureJsonData.Decrypt() {
if key == "password" {
password = value
break
}
}
sslmode := datasource.JsonData.Get("sslmode").MustString("verify-full")
u := &url.URL{Scheme: "postgres", User: url.UserPassword(datasource.User, password), Host: datasource.Url, Path: datasource.Database, RawQuery: "sslmode=" + sslmode}
return u.String()
}
func (e *PostgresQueryEndpoint) Query(ctx context.Context, dsInfo *models.DataSource, tsdbQuery *tsdb.TsdbQuery) (*tsdb.Response, error) {
return e.sqlEngine.Query(ctx, dsInfo, tsdbQuery, e.transformToTimeSeries, e.transformToTable)
}
func (e PostgresQueryEndpoint) transformToTable(query *tsdb.Query, rows *core.Rows, result *tsdb.QueryResult, tsdbQuery *tsdb.TsdbQuery) error {
columnNames, err := rows.Columns()
if err != nil {
return err
}
table := &tsdb.Table{
Columns: make([]tsdb.TableColumn, len(columnNames)),
Rows: make([]tsdb.RowValues, 0),
}
for i, name := range columnNames {
table.Columns[i].Text = name
}
rowLimit := 1000000
rowCount := 0
timeIndex := -1
// check if there is a column named time
for i, col := range columnNames {
switch col {
case "time":
timeIndex = i
}
}
for ; rows.Next(); rowCount++ {
if rowCount > rowLimit {
return fmt.Errorf("PostgreSQL query row limit exceeded, limit %d", rowLimit)
}
values, err := e.getTypedRowData(rows)
if err != nil {
return err
}
// converts column named time to unix timestamp in milliseconds to make
// native postgres datetime types and epoch dates work in
// annotation and table queries.
tsdb.ConvertSqlTimeColumnToEpochMs(values, timeIndex)
table.Rows = append(table.Rows, values)
}
result.Tables = append(result.Tables, table)
result.Meta.Set("rowCount", rowCount)
return nil
}
func (e PostgresQueryEndpoint) getTypedRowData(rows *core.Rows) (tsdb.RowValues, error) {
types, err := rows.ColumnTypes()
if err != nil {
return nil, err
}
values := make([]interface{}, len(types))
valuePtrs := make([]interface{}, len(types))
for i := 0; i < len(types); i++ {
valuePtrs[i] = &values[i]
}
if err := rows.Scan(valuePtrs...); err != nil {
return nil, err
}
// convert types not handled by lib/pq
// unhandled types are returned as []byte
for i := 0; i < len(types); i++ {
if value, ok := values[i].([]byte); ok == true {
switch types[i].DatabaseTypeName() {
case "NUMERIC":
if v, err := strconv.ParseFloat(string(value), 64); err == nil {
values[i] = v
} else {
e.log.Debug("Rows", "Error converting numeric to float", value)
}
case "UNKNOWN", "CIDR", "INET", "MACADDR":
// char literals have type UNKNOWN
values[i] = string(value)
default:
e.log.Debug("Rows", "Unknown database type", types[i].DatabaseTypeName(), "value", value)
values[i] = string(value)
}
}
}
return values, nil
}
func (e PostgresQueryEndpoint) transformToTimeSeries(query *tsdb.Query, rows *core.Rows, result *tsdb.QueryResult, tsdbQuery *tsdb.TsdbQuery) error {
pointsBySeries := make(map[string]*tsdb.TimeSeries)
seriesByQueryOrder := list.New()
columnNames, err := rows.Columns()
if err != nil {
return err
}
columnTypes, err := rows.ColumnTypes()
if err != nil {
return err
}
rowLimit := 1000000
rowCount := 0
timeIndex := -1
metricIndex := -1
// check columns of resultset: a column named time is mandatory
// the first text column is treated as metric name unless a column named metric is present
for i, col := range columnNames {
switch col {
case "time":
timeIndex = i
case "metric":
metricIndex = i
default:
if metricIndex == -1 {
switch columnTypes[i].DatabaseTypeName() {
case "UNKNOWN", "TEXT", "VARCHAR", "CHAR":
metricIndex = i
}
}
}
}
if timeIndex == -1 {
return fmt.Errorf("Found no column named time")
}
fillMissing := query.Model.Get("fill").MustBool(false)
var fillInterval float64
fillValue := null.Float{}
if fillMissing {
fillInterval = query.Model.Get("fillInterval").MustFloat64() * 1000
if query.Model.Get("fillNull").MustBool(false) == false {
fillValue.Float64 = query.Model.Get("fillValue").MustFloat64()
fillValue.Valid = true
}
}
for rows.Next() {
var timestamp float64
var value null.Float
var metric string
if rowCount > rowLimit {
return fmt.Errorf("PostgreSQL query row limit exceeded, limit %d", rowLimit)
}
values, err := e.getTypedRowData(rows)
if err != nil {
return err
}
switch columnValue := values[timeIndex].(type) {
case int64:
timestamp = float64(columnValue * 1000)
case float64:
timestamp = columnValue * 1000
case time.Time:
timestamp = float64(columnValue.UnixNano() / 1e6)
default:
return fmt.Errorf("Invalid type for column time, must be of type timestamp or unix timestamp, got: %T %v", columnValue, columnValue)
}
if metricIndex >= 0 {
if columnValue, ok := values[metricIndex].(string); ok == true {
metric = columnValue
} else {
return fmt.Errorf("Column metric must be of type char,varchar or text, got: %T %v", values[metricIndex], values[metricIndex])
}
}
for i, col := range columnNames {
if i == timeIndex || i == metricIndex {
continue
}
switch columnValue := values[i].(type) {
case int64:
value = null.FloatFrom(float64(columnValue))
case float64:
value = null.FloatFrom(columnValue)
case nil:
value.Valid = false
default:
return fmt.Errorf("Value column must have numeric datatype, column: %s type: %T value: %v", col, columnValue, columnValue)
}
if metricIndex == -1 {
metric = col
}
series, exist := pointsBySeries[metric]
if exist == false {
series = &tsdb.TimeSeries{Name: metric}
pointsBySeries[metric] = series
seriesByQueryOrder.PushBack(metric)
}
if fillMissing {
var intervalStart float64
if exist == false {
intervalStart = float64(tsdbQuery.TimeRange.MustGetFrom().UnixNano() / 1e6)
} else {
intervalStart = series.Points[len(series.Points)-1][1].Float64 + fillInterval
}
// align interval start
intervalStart = math.Floor(intervalStart/fillInterval) * fillInterval
for i := intervalStart; i < timestamp; i += fillInterval {
series.Points = append(series.Points, tsdb.TimePoint{fillValue, null.FloatFrom(i)})
rowCount++
}
}
series.Points = append(series.Points, tsdb.TimePoint{value, null.FloatFrom(timestamp)})
e.log.Debug("Rows", "metric", metric, "time", timestamp, "value", value)
rowCount++
}
}
for elem := seriesByQueryOrder.Front(); elem != nil; elem = elem.Next() {
key := elem.Value.(string)
result.Series = append(result.Series, pointsBySeries[key])
if fillMissing {
series := pointsBySeries[key]
// fill in values from last fetched value till interval end
intervalStart := series.Points[len(series.Points)-1][1].Float64
intervalEnd := float64(tsdbQuery.TimeRange.MustGetTo().UnixNano() / 1e6)
// align interval start
intervalStart = math.Floor(intervalStart/fillInterval) * fillInterval
for i := intervalStart + fillInterval; i < intervalEnd; i += fillInterval {
series.Points = append(series.Points, tsdb.TimePoint{fillValue, null.FloatFrom(i)})
rowCount++
}
}
}
result.Meta.Set("rowCount", rowCount)
return nil
}