[maven-release-plugin] prepare release java-diff-utils-parent-4.12

* Add test to reproduce issue #141

* Fix assumption on test to match expected behaviour expressed on #141

* Make "/" after "virtual" directories mandatory

Now the regex only matches with "a/", "b/", "new/" and "old/", previously the slash was taken as optional.
fixes #141

.github/release.yml

@@ -0,0 +1,8 @@
+changelog:
+  categories:
+    - title: Bugs solved
+      labels:
+        - "bug"  
+    - title: Changes and new Features
+      labels:
+        - "*"

README.md

@@ -89,7 +89,7 @@ Just add the code below to your maven dependencies:
 <dependency>
     <groupId>io.github.java-diff-utils</groupId>
     <artifactId>java-diff-utils</artifactId>
-    <version>4.9</version>
+    <version>4.11</version>
 </dependency>
 ```
 
@@ -97,5 +97,5 @@ or using gradle:
 
 ```groovy
 // https://mvnrepository.com/artifact/io.github.java-diff-utils/java-diff-utils
-implementation "io.github.java-diff-utils:java-diff-utils:4.5"
+implementation "io.github.java-diff-utils:java-diff-utils:4.11"
 ```

java-diff-utils-jgit/pom.xml

@@ -4,7 +4,7 @@
     <parent>
         <groupId>io.github.java-diff-utils</groupId>
         <artifactId>java-diff-utils-parent</artifactId>
-        <version>4.11</version>
+        <version>4.12</version>
     </parent>
     <artifactId>java-diff-utils-jgit</artifactId>
     <name>java-diff-utils-jgit</name>

java-diff-utils/pom.xml

@@ -7,7 +7,7 @@
     <parent>
         <groupId>io.github.java-diff-utils</groupId>
         <artifactId>java-diff-utils-parent</artifactId>
-        <version>4.11</version>
+        <version>4.12</version>
     </parent>
     <properties>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>

java-diff-utils/src/main/java/com/github/difflib/patch/AbstractDelta.java

@@ -70,6 +70,19 @@ public abstract class AbstractDelta<T> implements Serializable {
     
     protected abstract void restore(List<T> target);
     
+    /**
+     * Apply patch fuzzy.
+     *
+     * @param target the list this patch will be applied to
+     * @param fuzz the number of elements to ignore before/after the patched elements
+     * @param position the position this patch will be applied to. ignores {@code source.getPosition()}
+     * @see <a href="https://www.gnu.org/software/diffutils/manual/html_node/Inexact.html">Description of Fuzzy Patch</a> for more information.
+     */
+    @SuppressWarnings("RedundantThrows")
+    protected void applyFuzzyToAt(List<T> target, int fuzz, int position) throws PatchFailedException {
+        throw new UnsupportedOperationException(this.getClass().getSimpleName() + " does not supports applying patch fuzzy");
+    }
+
     /**
      * Create a new delta of the actual instance with customized chunk data.
      */

java-diff-utils/src/main/java/com/github/difflib/patch/ChangeDelta.java

@@ -66,6 +66,19 @@ public final class ChangeDelta<T> extends AbstractDelta<T> {
         }
     }
 
+    protected void applyFuzzyToAt(List<T> target, int fuzz, int position) throws PatchFailedException {
+        int size = getSource().size();
+        for (int i = fuzz; i < size - fuzz; i++) {
+            target.remove(position + fuzz);
+        }
+
+        int i = fuzz;
+        for (T line : getTarget().getLines().subList(fuzz, getTarget().size() - fuzz)) {
+            target.add(position + i, line);
+            i++;
+        }
+    }
+
     @Override
     public String toString() {
         return "[ChangeDelta, position: " + getSource().getPosition() + ", lines: "

java-diff-utils/src/main/java/com/github/difflib/patch/Chunk.java

@@ -95,10 +95,28 @@ public final class Chunk<T> implements Serializable {
      * @throws com.github.difflib.patch.PatchFailedException
      */
     public VerifyChunk verifyChunk(List<T> target) throws PatchFailedException {
-        if (position > target.size() || last() > target.size()) {
+        return verifyChunk(target, 0, getPosition());
+    }
+
+    /**
+     * Verifies that this chunk's saved text matches the corresponding text in
+     * the given sequence.
+     *
+     * @param target the sequence to verify against.
+     * @param fuzz the count of ignored prefix/suffix
+     * @param position the position of target
+     * @throws com.github.difflib.patch.PatchFailedException
+     */
+    public VerifyChunk verifyChunk(List<T> target, int fuzz, int position) throws PatchFailedException {
+        //noinspection UnnecessaryLocalVariable
+        int startIndex = fuzz;
+        int lastIndex = size() - fuzz;
+        int last = position + size() - 1;
+
+        if (position + fuzz > target.size() || last - fuzz > target.size()) {
             return VerifyChunk.POSITION_OUT_OF_TARGET;
         }
-        for (int i = 0; i < size(); i++) {
+        for (int i = startIndex; i < lastIndex; i++) {
             if (!target.get(position + i).equals(lines.get(i))) {
                 return VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET;
             }

java-diff-utils/src/main/java/com/github/difflib/patch/EqualDelta.java

@@ -35,6 +35,14 @@ public class EqualDelta<T> extends AbstractDelta<T> {
     protected void restore(List<T> target) {
     }
 
+    /**
+     * {@inheritDoc}
+     */
+    @Override
+    protected void applyFuzzyToAt(List<T> target, int fuzz, int delta) {
+        // equals so no operations
+    }
+
     @Override
     public String toString() {
         return "[EqualDelta, position: " + getSource().getPosition() + ", lines: "

java-diff-utils/src/main/java/com/github/difflib/patch/Patch.java

@@ -66,6 +66,117 @@ public final class Patch<T> implements Serializable {
         return result;
     }
 
+    private static class PatchApplyingContext<T> {
+        public final List<T> result;
+        public final int maxFuzz;
+
+        // the position last patch applied to.
+        public int lastPatchEnd = -1;
+
+        ///// passing values from find to apply
+        public int currentFuzz = 0;
+
+        public int defaultPosition;
+        public boolean beforeOutRange = false;
+        public boolean afterOutRange = false;
+
+        private PatchApplyingContext(List<T> result, int maxFuzz) {
+            this.result = result;
+            this.maxFuzz = maxFuzz;
+        }
+    }
+
+    public List<T> applyFuzzy(List<T> target, int maxFuzz) throws PatchFailedException {
+        PatchApplyingContext<T> ctx = new PatchApplyingContext<>(new ArrayList<>(target), maxFuzz);
+
+        // the difference between patch's position and actually applied position
+        int lastPatchDelta = 0;
+
+        for (AbstractDelta<T> delta : getDeltas()) {
+            ctx.defaultPosition = delta.getSource().getPosition() + lastPatchDelta;
+            int patchPosition = findPositionFuzzy(ctx, delta);
+            if (0 <= patchPosition) {
+                delta.applyFuzzyToAt(ctx.result, ctx.currentFuzz, patchPosition);
+                lastPatchDelta = patchPosition - delta.getSource().getPosition();
+                ctx.lastPatchEnd = delta.getSource().last() + lastPatchDelta;
+            } else {
+                conflictOutput.processConflict(VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET, delta, ctx.result);
+            }
+        }
+
+        return ctx.result;
+    }
+
+    // negative for not found
+    private int findPositionFuzzy(PatchApplyingContext<T> ctx, AbstractDelta<T> delta) throws PatchFailedException {
+        for (int fuzz = 0; fuzz <= ctx.maxFuzz; fuzz++) {
+            ctx.currentFuzz = fuzz;
+            int foundPosition = findPositionWithFuzz(ctx, delta, fuzz);
+            if (foundPosition >= 0) {
+                return foundPosition;
+            }
+        }
+        return -1;
+    }
+
+    // negative for not found
+    private int findPositionWithFuzz(PatchApplyingContext<T> ctx, AbstractDelta<T> delta, int fuzz) throws PatchFailedException {
+        if (delta.getSource().verifyChunk(ctx.result, fuzz, ctx.defaultPosition) == VerifyChunk.OK) {
+            return ctx.defaultPosition;
+        }
+
+        ctx.beforeOutRange = false;
+        ctx.afterOutRange = false;
+
+        // moreDelta >= 0: just for overflow guard, not a normal condition
+        //noinspection OverflowingLoopIndex
+        for (int moreDelta = 0; moreDelta >= 0; moreDelta++) {
+            int pos = findPositionWithFuzzAndMoreDelta(ctx, delta, fuzz, moreDelta);
+            if (pos >= 0) {
+                return pos;
+            }
+            if (ctx.beforeOutRange && ctx.afterOutRange) {
+                break;
+            }
+        }
+
+        return -1;
+    }
+
+    // negative for not found
+    private int findPositionWithFuzzAndMoreDelta(PatchApplyingContext<T> ctx, AbstractDelta<T> delta, int fuzz, int moreDelta) throws PatchFailedException {
+        // range check: can't apply before end of last patch
+        if (!ctx.beforeOutRange) {
+            int beginAt = ctx.defaultPosition - moreDelta + fuzz;
+            // We can't apply patch before end of last patch.
+            if (beginAt <= ctx.lastPatchEnd) {
+                ctx.beforeOutRange = true;
+            }
+        }
+        // range check: can't apply after end of result
+        if (!ctx.afterOutRange) {
+            int beginAt = ctx.defaultPosition + moreDelta + delta.getSource().size() - fuzz;
+            // We can't apply patch before end of last patch.
+            if (ctx.result.size() < beginAt) {
+                ctx.afterOutRange = true;
+            }
+        }
+
+        if (!ctx.beforeOutRange) {
+            VerifyChunk before = delta.getSource().verifyChunk(ctx.result, fuzz, ctx.defaultPosition - moreDelta);
+            if (before == VerifyChunk.OK) {
+                return ctx.defaultPosition - moreDelta;
+            }
+        }
+        if (!ctx.afterOutRange) {
+            VerifyChunk after = delta.getSource().verifyChunk(ctx.result, fuzz, ctx.defaultPosition + moreDelta);
+            if (after == VerifyChunk.OK) {
+                return ctx.defaultPosition + moreDelta;
+            }
+        }
+        return -1;
+    }
+
     /**
      * Standard Patch behaviour to throw an exception for pathching conflicts.
      */

java-diff-utils/src/main/java/com/github/difflib/text/DiffRowGenerator.java

@@ -173,6 +173,7 @@ public final class DiffRowGenerator {
 
     private final boolean showInlineDiffs;
     private final boolean replaceOriginalLinefeedInChangesWithSpaces;
+    private final boolean decompressDeltas;
 
     private DiffRowGenerator(Builder builder) {
         showInlineDiffs = builder.showInlineDiffs;
@@ -182,6 +183,7 @@ public final class DiffRowGenerator {
         columnWidth = builder.columnWidth;
         mergeOriginalRevised = builder.mergeOriginalRevised;
         inlineDiffSplitter = builder.inlineDiffSplitter;
+        decompressDeltas = builder.decompressDeltas;
 
         if (builder.equalizer != null) {
             equalizer = builder.equalizer;
@@ -225,8 +227,14 @@ public final class DiffRowGenerator {
         int endPos = 0;
         final List<AbstractDelta<String>> deltaList = patch.getDeltas();
 
-        for (AbstractDelta<String> originalDelta : deltaList) {
-            for (AbstractDelta<String> delta : decompressDeltas(originalDelta)) {
+        if (decompressDeltas) {
+            for (AbstractDelta<String> originalDelta : deltaList) {
+                for (AbstractDelta<String> delta : decompressDeltas(originalDelta)) {
+                    endPos = transformDeltaIntoDiffRow(original, endPos, diffRows, delta);
+                }
+            }
+        } else {
+            for (AbstractDelta<String> delta : deltaList) {
                 endPos = transformDeltaIntoDiffRow(original, endPos, diffRows, delta);
             }
         }
@@ -442,6 +450,7 @@ public final class DiffRowGenerator {
 
         private boolean showInlineDiffs = false;
         private boolean ignoreWhiteSpaces = false;
+        private boolean decompressDeltas = true;
 
         private BiFunction<Tag, Boolean, String> oldTag
                 = (tag, f) -> f ? "<span class=\"editOldInline\">" : "</span>";
@@ -554,7 +563,8 @@ public final class DiffRowGenerator {
          * Set the column width of generated lines of original and revised
          * texts.
          *
-         * @param width the width to set. Making it &lt; 0 doesn't make any sense. Default 80.
+         * @param width the width to set. Making it &lt; 0 doesn't make any
+         * sense. Default 80.
          * @return builder with config of column width
          */
         public Builder columnWidth(int width) {
@@ -586,6 +596,19 @@ public final class DiffRowGenerator {
             return this;
         }
 
+        /**
+         * Deltas could be in a state, that would produce some unreasonable
+         * results within an inline diff. So the deltas are decompressed into
+         * smaller parts and rebuild. But this could result in more differences.
+         *
+         * @param decompressDeltas
+         * @return
+         */
+        public Builder decompressDeltas(boolean decompressDeltas) {
+            this.decompressDeltas = decompressDeltas;
+            return this;
+        }
+
         /**
          * Per default each character is separatly processed. This variant
          * introduces processing by word, which does not deliver in word

java-diff-utils/src/main/java/com/github/difflib/unifieddiff/UnifiedDiffReader.java

@@ -353,7 +353,7 @@ public final class UnifiedDiffReader {
             line = line.substring(0, matcher.start());
         }
         line = line.split("\t")[0];
-        return line.substring(4).replaceFirst("^(a|b|old|new)(\\/)?", "")
+        return line.substring(4).replaceFirst("^(a|b|old|new)/", "")
                 .trim();
     }
 

java-diff-utils/src/test/java/com/github/difflib/algorithm/myers/WithMeyersDiffWithLinearSpacePatchTest.java

@@ -2,6 +2,7 @@ package com.github.difflib.algorithm.myers;
 
 import com.github.difflib.patch.*;
 import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertThrows;
 import static org.junit.jupiter.api.Assertions.fail;
 
 import java.io.ByteArrayInputStream;
@@ -9,8 +10,13 @@ import java.io.ByteArrayOutputStream;
 import java.io.IOException;
 import java.io.ObjectInputStream;
 import java.io.ObjectOutputStream;
+import java.util.ArrayList;
 import java.util.Arrays;
+import java.util.Collection;
+import java.util.Comparator;
 import java.util.List;
+import java.util.stream.Collectors;
+import java.util.stream.IntStream;
 
 import org.junit.jupiter.api.Test;
 
@@ -57,6 +63,104 @@ public class WithMeyersDiffWithLinearSpacePatchTest {
         }
     }
 
+    // region testPatch_fuzzyApply utils
+
+    private List<String> intRange(int count) {
+        return IntStream.range(0, count)
+                .mapToObj(Integer::toString)
+                .collect(Collectors.toList());
+    }
+
+    @SafeVarargs
+    private final List<String> join(List<String>... lists) {
+        return Arrays.stream(lists).flatMap(Collection::stream).collect(Collectors.toList());
+    }
+
+    private static class FuzzyApplyTestPair {
+        public final List<String> from;
+        public final List<String> to;
+        public final int requiredFuzz;
+
+        private FuzzyApplyTestPair(List<String> from, List<String> to, int requiredFuzz) {
+            this.from = from;
+            this.to = to;
+            this.requiredFuzz = requiredFuzz;
+        }
+    }
+
+    // endregion
+
+    @Test
+    public void fuzzyApply() throws PatchFailedException {
+        Patch<String> patch = new Patch<>();
+        List<String> deltaFrom = Arrays.asList("aaa", "bbb", "ccc", "ddd", "eee", "fff");
+        List<String> deltaTo = Arrays.asList("aaa", "bbb", "cxc", "dxd", "eee", "fff");
+        patch.addDelta(new ChangeDelta<>(
+                new Chunk<>(6, deltaFrom),
+                new Chunk<>(6, deltaTo)));
+
+        //noinspection unchecked
+        List<String>[] moves = new List[] {
+                intRange(6), // no patch move
+                intRange(3), // forward patch move
+                intRange(9), // backward patch move
+                intRange(0), // apply to the first
+        };
+
+        for (FuzzyApplyTestPair pair : FUZZY_APPLY_TEST_PAIRS) {
+            for (List<String> move : moves) {
+                List<String> from = join(move, pair.from);
+                List<String> to = join(move, pair.to);
+
+                for (int i = 0; i < pair.requiredFuzz; i++) {
+                    int maxFuzz = i;
+                    assertThrows(PatchFailedException.class, () ->
+                            patch.applyFuzzy(from, maxFuzz),
+                            () -> "fail for " + from + " -> " + to + " for fuzz " + maxFuzz + " required " + pair.requiredFuzz);
+                }
+                for (int i = pair.requiredFuzz; i < 4; i++) {
+                    int maxFuzz = i;
+                    assertEquals(to, patch.applyFuzzy(from, maxFuzz),
+                            () -> "with " + maxFuzz);
+                }
+            }
+        }
+    }
+
+    @Test
+    public void fuzzyApplyTwoSideBySidePatches() throws PatchFailedException {
+        Patch<String> patch = new Patch<>();
+        List<String> deltaFrom = Arrays.asList("aaa", "bbb", "ccc", "ddd", "eee", "fff");
+        List<String> deltaTo = Arrays.asList("aaa", "bbb", "cxc", "dxd", "eee", "fff");
+        patch.addDelta(new ChangeDelta<>(
+                new Chunk<>(0, deltaFrom),
+                new Chunk<>(0, deltaTo)));
+        patch.addDelta(new ChangeDelta<>(
+                new Chunk<>(6, deltaFrom),
+                new Chunk<>(6, deltaTo)));
+
+
+        assertEquals(join(deltaTo, deltaTo), patch.applyFuzzy(join(deltaFrom, deltaFrom), 0));
+    }
+
+    @Test
+    public void fuzzyApplyToNearest() throws PatchFailedException {
+        Patch<String> patch = new Patch<>();
+        List<String> deltaFrom = Arrays.asList("aaa", "bbb", "ccc", "ddd", "eee", "fff");
+        List<String> deltaTo = Arrays.asList("aaa", "bbb", "cxc", "dxd", "eee", "fff");
+        patch.addDelta(new ChangeDelta<>(
+                new Chunk<>(0, deltaFrom),
+                new Chunk<>(0, deltaTo)));
+        patch.addDelta(new ChangeDelta<>(
+                new Chunk<>(10, deltaFrom),
+                new Chunk<>(10, deltaTo)));
+
+        assertEquals(join(deltaTo, deltaFrom, deltaTo),
+                patch.applyFuzzy(join(deltaFrom, deltaFrom, deltaFrom), 0));
+        assertEquals(join(intRange(1), deltaTo, deltaFrom, deltaTo),
+                patch.applyFuzzy(join(intRange(1), deltaFrom, deltaFrom, deltaFrom), 0));
+    }
+
     @Test
     public void testPatch_Serializable() throws IOException, ClassNotFoundException {
         final List<String> changeTest_from = Arrays.asList("aaa", "bbb", "ccc", "ddd");
@@ -101,4 +205,190 @@ public class WithMeyersDiffWithLinearSpacePatchTest {
             fail(e.getMessage());
         }
     }
+
+    static class FuzzyApplyTestDataGenerator {
+        private static String createList(List<String> values) {
+            return values.stream()
+                    .map(x -> '"' + x + '"')
+                    .collect(Collectors.joining(", ", "Arrays.asList(", ")"));
+        }
+
+        public static void main(String[] args) {
+            String[] deltaFrom = new String[] { "aaa", "bbb", "ccc", "ddd", "eee", "fff" };
+            String[] deltaTo = new String[] { "aaa", "bbb", "cxc", "dxd", "eee", "fff" };
+
+            List<FuzzyApplyTestPair> pairs = new ArrayList<>();
+
+            // create test data.
+            // Brute-force search
+            String[] changedValue = new String[]{"axa", "bxb", "czc", "dzd", "exe", "fxf"};
+            for (int i = 0; i < 1 << 6; i++) {
+                if ((i & 0b001100) != 0 && (i & 0b001100) != 0b001100) {
+                    continue;
+                }
+
+                String[] from = deltaFrom.clone();
+                String[] to = deltaTo.clone();
+                for (int j = 0; j < 6; j++) {
+                    if ((i & (1 << j)) != 0) {
+                        from[j] = changedValue[j];
+                        to[j] = changedValue[j];
+                    }
+                }
+
+                int requiredFuzz;
+                if ((i & 0b001100) != 0) {
+                    requiredFuzz = 3;
+                } else if ((i & 0b010010) != 0) {
+                    requiredFuzz = 2;
+                } else if ((i & 0b100001) != 0) {
+                    requiredFuzz = 1;
+                } else {
+                    requiredFuzz = 0;
+                }
+
+                pairs.add(new FuzzyApplyTestPair(Arrays.asList(from), Arrays.asList(to), requiredFuzz));
+            }
+            pairs.sort(Comparator.comparingInt(a -> a.requiredFuzz));
+            System.out.println("FuzzyApplyTestPair[] pairs = new FuzzyApplyTestPair[] {");
+            for (FuzzyApplyTestPair pair : pairs) {
+                System.out.println("        new FuzzyApplyTestPair(");
+                System.out.println("                " + createList(pair.from) + ",");
+                System.out.println("                " + createList(pair.to) + ",");
+                System.out.println("                " + pair.requiredFuzz + "),");
+            }
+            System.out.println("};");
+        }
+    }
+
+    private static final FuzzyApplyTestPair[] FUZZY_APPLY_TEST_PAIRS = new FuzzyApplyTestPair[] {
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "ccc", "ddd", "eee", "fff"),
+                    Arrays.asList("aaa", "bbb", "cxc", "dxd", "eee", "fff"),
+                    0),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "ccc", "ddd", "eee", "fff"),
+                    Arrays.asList("axa", "bbb", "cxc", "dxd", "eee", "fff"),
+                    1),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "ccc", "ddd", "eee", "fxf"),
+                    Arrays.asList("aaa", "bbb", "cxc", "dxd", "eee", "fxf"),
+                    1),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "ccc", "ddd", "eee", "fxf"),
+                    Arrays.asList("axa", "bbb", "cxc", "dxd", "eee", "fxf"),
+                    1),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "ccc", "ddd", "eee", "fff"),
+                    Arrays.asList("aaa", "bxb", "cxc", "dxd", "eee", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "ccc", "ddd", "eee", "fff"),
+                    Arrays.asList("axa", "bxb", "cxc", "dxd", "eee", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "ccc", "ddd", "exe", "fff"),
+                    Arrays.asList("aaa", "bbb", "cxc", "dxd", "exe", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "ccc", "ddd", "exe", "fff"),
+                    Arrays.asList("axa", "bbb", "cxc", "dxd", "exe", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "ccc", "ddd", "exe", "fff"),
+                    Arrays.asList("aaa", "bxb", "cxc", "dxd", "exe", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "ccc", "ddd", "exe", "fff"),
+                    Arrays.asList("axa", "bxb", "cxc", "dxd", "exe", "fff"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "ccc", "ddd", "eee", "fxf"),
+                    Arrays.asList("aaa", "bxb", "cxc", "dxd", "eee", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "ccc", "ddd", "eee", "fxf"),
+                    Arrays.asList("axa", "bxb", "cxc", "dxd", "eee", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "ccc", "ddd", "exe", "fxf"),
+                    Arrays.asList("aaa", "bbb", "cxc", "dxd", "exe", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "ccc", "ddd", "exe", "fxf"),
+                    Arrays.asList("axa", "bbb", "cxc", "dxd", "exe", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "ccc", "ddd", "exe", "fxf"),
+                    Arrays.asList("aaa", "bxb", "cxc", "dxd", "exe", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "ccc", "ddd", "exe", "fxf"),
+                    Arrays.asList("axa", "bxb", "cxc", "dxd", "exe", "fxf"),
+                    2),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "eee", "fff"),
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "eee", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "eee", "fff"),
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "eee", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "eee", "fff"),
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "eee", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "eee", "fff"),
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "eee", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "exe", "fff"),
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "exe", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "exe", "fff"),
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "exe", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "exe", "fff"),
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "exe", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "exe", "fff"),
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "exe", "fff"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "eee", "fxf"),
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "eee", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "eee", "fxf"),
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "eee", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "eee", "fxf"),
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "eee", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "eee", "fxf"),
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "eee", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "exe", "fxf"),
+                    Arrays.asList("aaa", "bbb", "czc", "dzd", "exe", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "exe", "fxf"),
+                    Arrays.asList("axa", "bbb", "czc", "dzd", "exe", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "exe", "fxf"),
+                    Arrays.asList("aaa", "bxb", "czc", "dzd", "exe", "fxf"),
+                    3),
+            new FuzzyApplyTestPair(
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "exe", "fxf"),
+                    Arrays.asList("axa", "bxb", "czc", "dzd", "exe", "fxf"),
+                    3),
+    };
 }

java-diff-utils/src/test/java/com/github/difflib/examples/ComputeDifference.java

@@ -12,11 +12,11 @@ import java.util.List;
 public class ComputeDifference {
 
     private static final String ORIGINAL = TestConstants.MOCK_FOLDER + "original.txt";
-    private static final String RIVISED = TestConstants.MOCK_FOLDER + "revised.txt";
+    private static final String REVISED = TestConstants.MOCK_FOLDER + "revised.txt";
 
     public static void main(String[] args) throws IOException {
         List<String> original = Files.readAllLines(new File(ORIGINAL).toPath());
-        List<String> revised = Files.readAllLines(new File(RIVISED).toPath());
+        List<String> revised = Files.readAllLines(new File(REVISED).toPath());
 
         // Compute diff. Get the Patch object. Patch is the container for computed deltas.
         Patch<String> patch = DiffUtils.diff(original, revised);

java-diff-utils/src/test/java/com/github/difflib/patch/ChunkTest.java

@@ -0,0 +1,43 @@
+package com.github.difflib.patch;
+
+import org.junit.jupiter.api.Test;
+
+import java.util.List;
+import java.util.stream.Collectors;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+
+class ChunkTest {
+    @Test
+    void verifyChunk() throws PatchFailedException {
+        Chunk<Character> chunk = new Chunk<>(7, toCharList("test"));
+
+        // normal check
+        assertEquals(VerifyChunk.OK,
+                chunk.verifyChunk(toCharList("prefix test suffix")));
+        assertEquals(VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET,
+                chunk.verifyChunk(toCharList("prefix  es  suffix"), 0, 7));
+
+        // position
+        assertEquals(VerifyChunk.OK,
+                chunk.verifyChunk(toCharList("short test suffix"), 0, 6));
+        assertEquals(VerifyChunk.OK,
+                chunk.verifyChunk(toCharList("loonger test suffix"), 0, 8));
+        assertEquals(VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET,
+                chunk.verifyChunk(toCharList("prefix test suffix"), 0, 6));
+        assertEquals(VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET,
+                chunk.verifyChunk(toCharList("prefix test suffix"), 0, 8));
+
+        // fuzz
+        assertEquals(VerifyChunk.OK,
+                chunk.verifyChunk(toCharList("prefix test suffix"), 1, 7));
+        assertEquals(VerifyChunk.OK,
+                chunk.verifyChunk(toCharList("prefix  es  suffix"), 1, 7));
+        assertEquals(VerifyChunk.CONTENT_DOES_NOT_MATCH_TARGET,
+                chunk.verifyChunk(toCharList("prefix      suffix"), 1, 7));
+    }
+
+    private List<Character> toCharList(String str) {
+        return str.chars().mapToObj(x -> (char) x).collect(Collectors.toList());
+    }
+}

java-diff-utils/src/test/java/com/github/difflib/patch/PatchWithMeyerDiffTest.java

@@ -16,8 +16,10 @@
 package com.github.difflib.patch;
 
 import com.github.difflib.DiffUtils;
+import static com.github.difflib.patch.Patch.CONFLICT_PRODUCES_MERGE_CONFLICT;
 import java.util.Arrays;
 import java.util.List;
+import static java.util.stream.Collectors.joining;
 import static org.junit.jupiter.api.Assertions.assertEquals;
 import static org.junit.jupiter.api.Assertions.fail;
 import org.junit.jupiter.api.Test;
@@ -27,6 +29,7 @@ import org.junit.jupiter.api.Test;
  * @author tw
  */
 public class PatchWithMeyerDiffTest {
+
     @Test
     public void testPatch_Change_withExceptionProcessor() {
         final List<String> changeTest_from = Arrays.asList("aaa", "bbb", "ccc", "ddd");
@@ -48,4 +51,18 @@ public class PatchWithMeyerDiffTest {
             fail(e.getMessage());
         }
     }
+
+    @Test
+    public void testPatchThreeWayIssue138() throws PatchFailedException {
+        List<String> base = Arrays.asList("Imagine there's no heaven".split("\\s+"));
+        List<String> left = Arrays.asList("Imagine there's no HEAVEN".split("\\s+"));
+        List<String> right = Arrays.asList("IMAGINE there's no heaven".split("\\s+"));
+
+        Patch<String> rightPatch = DiffUtils.diff(base, right)
+                .withConflictOutput(CONFLICT_PRODUCES_MERGE_CONFLICT);
+
+        List<String> applied = rightPatch.applyTo(left);
+
+        assertEquals("IMAGINE there's no HEAVEN", applied.stream().collect(joining(" ")));
+    }
 }

java-diff-utils/src/test/java/com/github/difflib/text/DiffRowGeneratorTest.java

@@ -641,7 +641,7 @@ public class DiffRowGeneratorTest {
 
         assertThat(rows).extracting(item -> item.getTag().name()).containsExactly("CHANGE", "DELETE", "EQUAL", "CHANGE", "EQUAL");
     }
-    
+
     @Test
     public void testCorrectChangeIssue114_2() throws IOException {
         List<String> original = Arrays.asList("A", "B", "C", "D", "E");
@@ -662,7 +662,7 @@ public class DiffRowGeneratorTest {
         assertThat(rows).extracting(item -> item.getTag().name()).containsExactly("CHANGE", "DELETE", "EQUAL", "CHANGE", "EQUAL");
         assertThat(rows.get(1).toString()).isEqualTo("[DELETE,~B~,]");
     }
-    
+
     @Test
     public void testIssue119WrongContextLength() throws IOException {
         String original = Files.lines(Paths.get("target/test-classes/com/github/difflib/text/issue_119_original.txt")).collect(joining("\n"));
@@ -683,4 +683,106 @@ public class DiffRowGeneratorTest {
                 .filter(item -> item.getTag() != DiffRow.Tag.EQUAL)
                 .forEach(System.out::println);
     }
+
+    @Test
+    public void testIssue129WithDeltaDecompression() {
+        List<String> lines1 = Arrays.asList(
+                "apple1",
+                "apple2",
+                "apple3",
+                "A man named Frankenstein abc to Switzerland for cookies!",
+                "banana1",
+                "banana2",
+                "banana3");
+        List<String> lines2 = Arrays.asList(
+                "apple1",
+                "apple2",
+                "apple3",
+                "A man named Frankenstein",
+                "xyz",
+                "to Switzerland for cookies!",
+                "banana1",
+                "banana2",
+                "banana3");
+        int[] entry = {1};
+        String txt = DiffRowGenerator.create()
+                .showInlineDiffs(true)
+                .oldTag((tag, isOpening) -> isOpening ? "==old" + tag + "==>" : "<==old==")
+                .newTag((tag, isOpening) -> isOpening ? "==new" + tag + "==>" : "<==new==")
+                .build()
+                .generateDiffRows(lines1, lines2)
+                .stream()
+                .map(row -> row.getTag().toString())
+                .collect(joining(" "));
+//                .forEachOrdered(row -> {
+//                    System.out.printf("%4d %-8s %-80s %-80s\n", entry[0]++,
+//                            row.getTag(), row.getOldLine(), row.getNewLine());
+//                });
+
+        assertThat(txt).isEqualTo("EQUAL EQUAL EQUAL CHANGE INSERT INSERT EQUAL EQUAL EQUAL");
+    }
+    
+    @Test
+    public void testIssue129SkipDeltaDecompression() {
+        List<String> lines1 = Arrays.asList(
+                "apple1",
+                "apple2",
+                "apple3",
+                "A man named Frankenstein abc to Switzerland for cookies!",
+                "banana1",
+                "banana2",
+                "banana3");
+        List<String> lines2 = Arrays.asList(
+                "apple1",
+                "apple2",
+                "apple3",
+                "A man named Frankenstein",
+                "xyz",
+                "to Switzerland for cookies!",
+                "banana1",
+                "banana2",
+                "banana3");
+        int[] entry = {1};
+        String txt = 
+                DiffRowGenerator.create()
+                .showInlineDiffs(true)
+                .decompressDeltas(false)
+                .oldTag((tag, isOpening) -> isOpening ? "==old" + tag + "==>" : "<==old==")
+                .newTag((tag, isOpening) -> isOpening ? "==new" + tag + "==>" : "<==new==")
+                .build()
+                .generateDiffRows(lines1, lines2)
+                .stream()
+                .map(row -> row.getTag().toString())
+                .collect(joining(" "));
+//                .forEachOrdered(row -> {
+//                    System.out.printf("%4d %-8s %-80s %-80s\n", entry[0]++,
+//                            row.getTag(), row.getOldLine(), row.getNewLine());
+//                });
+
+        assertThat(txt).isEqualTo("EQUAL EQUAL EQUAL CHANGE CHANGE CHANGE EQUAL EQUAL EQUAL");
+    }
+    
+    @Test
+    public void testIssue129SkipWhitespaceChanges() throws IOException {
+        String original = Files.lines(Paths.get("target/test-classes/com/github/difflib/text/issue129_1.txt")).collect(joining("\n"));
+        String revised = Files.lines(Paths.get("target/test-classes/com/github/difflib/text/issue129_2.txt")).collect(joining("\n"));
+
+        DiffRowGenerator generator = DiffRowGenerator.create()
+                .showInlineDiffs(true)
+                .mergeOriginalRevised(true)
+                .inlineDiffByWord(true)
+                .ignoreWhiteSpaces(true)
+                .oldTag((tag, isOpening) -> isOpening ? "==old" + tag + "==>" : "<==old==")
+                .newTag((tag, isOpening) -> isOpening ? "==new" + tag + "==>" : "<==new==")
+                .build();
+        List<DiffRow> rows = generator.generateDiffRows(
+                Arrays.asList(original.split("\n")),
+                Arrays.asList(revised.split("\n")));
+
+        assertThat(rows).hasSize(13);
+        
+        rows.stream()
+                .filter(item -> item.getTag() != DiffRow.Tag.EQUAL)
+                .forEach(System.out::println);
+    }
 }

java-diff-utils/src/test/java/com/github/difflib/unifieddiff/UnifiedDiffReaderTest.java

@@ -122,7 +122,7 @@ public class UnifiedDiffReaderTest {
         assertThat(diff.getFiles().size()).isEqualTo(1);
 
         UnifiedDiffFile file1 = diff.getFiles().get(0);
-        assertThat(file1.getFromFile()).isEqualTo(".vhd");
+        assertThat(file1.getFromFile()).isEqualTo("a.vhd");
         assertThat(file1.getPatch().getDeltas().size()).isEqualTo(1);
 
         assertThat(diff.getTail()).isNull();
@@ -384,4 +384,14 @@ public class UnifiedDiffReaderTest {
 
         assertThat(diff.getFiles()).extracting(f -> f.getFromFile()).contains("src/java/main/org/apache/zookeeper/server/FinalRequestProcessor.java");
     }
+
+    @Test
+    public void testParseIssue141() throws IOException {
+        UnifiedDiff diff = UnifiedDiffReader.parseUnifiedDiff(
+                UnifiedDiffReaderTest.class.getResourceAsStream("problem_diff_issue141.diff"));
+        UnifiedDiffFile file1 = diff.getFiles().get(0);
+
+        assertThat(file1.getFromFile()).isEqualTo("a.txt");
+        assertThat(file1.getToFile()).isEqualTo("a1.txt");
+    }
 }

java-diff-utils/src/test/java/com/github/difflib/unifieddiff/UnifiedDiffRoundTripNewLineTest.java

@@ -0,0 +1,46 @@
+/*
+ * Copyright 2022 java-diff-utils.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.github.difflib.unifieddiff;
+
+import com.github.difflib.patch.PatchFailedException;
+import java.io.ByteArrayInputStream;
+import java.io.IOException;
+import java.util.Arrays;
+import static java.util.stream.Collectors.joining;
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import org.junit.jupiter.api.Disabled;
+import org.junit.jupiter.api.Test;
+
+@Disabled("for next release")
+public class UnifiedDiffRoundTripNewLineTest {
+    @Test
+    public void testIssue135MissingNoNewLineInPatched() throws IOException, PatchFailedException {
+        String beforeContent = "rootProject.name = \"sample-repo\"";
+        String afterContent = "rootProject.name = \"sample-repo\"\n";
+        String patch = "diff --git a/settings.gradle b/settings.gradle\n" +
+        "index ef3b8e2..ab30124 100644\n" +
+        "--- a/settings.gradle\n" +
+        "+++ b/settings.gradle\n" +
+        "@@ -1 +1 @@\n" +
+        "-rootProject.name = \"sample-repo\"\n" +
+        "\\ No newline at end of file\n" +
+        "+rootProject.name = \"sample-repo\"\n";
+        UnifiedDiff unifiedDiff = UnifiedDiffReader.parseUnifiedDiff(new ByteArrayInputStream(patch.getBytes()));
+        String unifiedAfterContent = unifiedDiff.getFiles().get(0).getPatch()
+                .applyTo(Arrays.asList(beforeContent.split("\n"))).stream().collect(joining("\n"));
+        assertEquals(afterContent, unifiedAfterContent);
+    }
+}

java-diff-utils/src/test/resources/com/github/difflib/text/issue129_1.txt

@@ -0,0 +1,12 @@
+Four score and seven years ago our fathers brought forth on this continent, a new nation, conceived in Liberty, and dedicated
+to the proposition that all men are created equal. Now we are engaged in a great civil war, testing whether that nation, or
+any nation so conceived and so dedicated, can long endure. We are met on a great battle-field of that war. We have come to
+dedicate a portion of that field, as a final resting place for those who here gave their lives that that nation might live.
+It is altogether fitting and proper that we should do this.  But, in a larger sense, we can not dedicate -- we can not
+consecrate -- we can not hallow -- this ground. The brave men, living and dead, who struggled here, have consecrated it,
+far above our poor power to add or detract. The world will little note, nor long remember what we say here, but it can never
+forget what they did here. It is for us the living, rather, to be dedicated here to the unfinished work which they who fought
+here have thus far so nobly advanced. It is rather for us to be here dedicated to the great task remaining before us -- that
+from these honored dead we take increased devotion to that cause for which they gave the last full measure of devotion -- that
+we here highly resolve that these dead shall not have died in vain -- that this nation, under God, shall have a new birth of
+freedom -- and that government of the people, by the people, for the people, shall not perish from the earth.

java-diff-utils/src/test/resources/com/github/difflib/text/issue129_2.txt

@@ -0,0 +1,13 @@
+Four score and seven years ago our fathers brought forth on this continent, a new nation, conceived in Liberty, and
+dedicated to the proposition that all men are created equal. Now we are engaged in a great civil war, testing whether
+that nation, or any nation so conceived and so dedicated, can long endure. We are met on a great battle-field of that
+war. We have come to dedicate a portion of that field, as a final resting place for those who here gave their lives
+that that nation might live. It is altogether fitting and proper that we should do this.  But, in a larger sense, we
+can not dedicate -- we can not consecrate -- we can not hallow -- this ground. The brave men, living and dead, who
+struggled here, have consecrated it, far above our poor power to add or detract. The world will little note, nor long
+remember what we say here, but it can never forget what they did here. It is for us the living, rather, to be dedicated
+here to the unfinished work which they who fought here have thus far so nobly advanced. It is rather for us to be here
+dedicated to the great task remaining before us -- that from these honored dead we take increased devotion to that cause
+for which they gave the last full measure of devotion -- that we here highly resolve that these dead shall not have died
+in vain -- that this nation, under God, shall have a new birth of freedom -- and that government of the people, by the
+people, for the people, shall not perish from the earth.

java-diff-utils/src/test/resources/com/github/difflib/unifieddiff/problem_diff_issue141.diff

@@ -0,0 +1,11 @@
+--- a.txt
++++ a1.txt
+@@ -8,7 +8,7 @@
+     <Setting>
+         <Setting a>
+             <setting b>
+-                <value>23</value>
++                <value>24</value>
+             </setting b>
+             <setting c>
+                 <value>1</value>

pom.xml

@@ -3,7 +3,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>io.github.java-diff-utils</groupId>
     <artifactId>java-diff-utils-parent</artifactId>
-    <version>4.11</version>
+    <version>4.12</version>
     <name>java-diff-utils-parent</name>
     <packaging>pom</packaging>
     <modules>
@@ -29,7 +29,7 @@
         <connection>scm:git:https://github.com/java-diff-utils/java-diff-utils.git</connection>
         <developerConnection>scm:git:ssh://git@github.com:java-diff-utils/java-diff-utils.git</developerConnection>
         <url>https://github.com/java-diff-utils/java-diff-utils.git</url>
-        <tag>java-diff-utils-parent-4.11</tag>
+        <tag>java-diff-utils-parent-4.12</tag>
     </scm>
     <issueManagement>
         <system>GitHub Issues</system>
@@ -199,7 +199,7 @@
                     <plugin>
                         <groupId>org.apache.maven.plugins</groupId>
                         <artifactId>maven-gpg-plugin</artifactId>
-                        <version>1.4</version>
+                        <version>1.6</version>
                         <executions>
                             <execution>
                                 <id>sign-artifacts</id>