Packages are the primary conceptual object in the tool, but currently they are represented simply as Directory (or occasionally a path string). This introduces an object for packages and:
- moves a number of existing utility methods into it
- sweeps the code for the obvious cases of using `Directory` to represent a package, especially in method signatures and migrates them
- notes a few places where we should migrate later, to avoid ballooning the size of the PR
There are no doubt other cases not caught in the sweep, but this gives us a foundation both for new code, and to migrate incrementally toward as we find existing code that was missed.
common.dart is a large-and-growing file containing all shared code,
which makes it hard to navigate. To make maintenance easier, this splits
the file (and its test file) into separate files for each major
component or category.
