diff --git a/script/tool/lib/src/common/cmake.dart b/script/tool/lib/src/common/cmake.dart
index 04ad880292..3f5d8452bd 100644
--- a/script/tool/lib/src/common/cmake.dart
+++ b/script/tool/lib/src/common/cmake.dart
@@ -3,9 +3,9 @@
 // found in the LICENSE file.
 
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/core.dart';
 import 'package:platform/platform.dart';
 
+import 'core.dart';
 import 'process_runner.dart';
 
 const String _cacheCommandKey = 'CMAKE_COMMAND:INTERNAL';
diff --git a/script/tool/lib/src/common/package_state_utils.dart b/script/tool/lib/src/common/package_state_utils.dart
index 870956a24b..a0c82400e1 100644
--- a/script/tool/lib/src/common/package_state_utils.dart
+++ b/script/tool/lib/src/common/package_state_utils.dart
@@ -3,10 +3,10 @@
 // found in the LICENSE file.
 
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/git_version_finder.dart';
 import 'package:meta/meta.dart';
 import 'package:path/path.dart' as p;
 
+import 'git_version_finder.dart';
 import 'repository_package.dart';
 
 /// The state of a package on disk relative to git state.
diff --git a/script/tool/lib/src/common/plugin_utils.dart b/script/tool/lib/src/common/plugin_utils.dart
index f33d3d73bb..94677fe7e5 100644
--- a/script/tool/lib/src/common/plugin_utils.dart
+++ b/script/tool/lib/src/common/plugin_utils.dart
@@ -2,10 +2,10 @@
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
-import 'package:flutter_plugin_tools/src/common/repository_package.dart';
 import 'package:yaml/yaml.dart';
 
 import 'core.dart';
+import 'repository_package.dart';
 
 /// Possible plugin support options for a platform.
 enum PlatformSupport {
diff --git a/script/tool/lib/src/federation_safety_check_command.dart b/script/tool/lib/src/federation_safety_check_command.dart
index 383637a9e8..93a832eb0e 100644
--- a/script/tool/lib/src/federation_safety_check_command.dart
+++ b/script/tool/lib/src/federation_safety_check_command.dart
@@ -3,7 +3,6 @@
 // found in the LICENSE file.
 
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/plugin_utils.dart';
 import 'package:git/git.dart';
 import 'package:path/path.dart' as p;
 import 'package:platform/platform.dart';
@@ -13,6 +12,7 @@ import 'common/core.dart';
 import 'common/file_utils.dart';
 import 'common/git_version_finder.dart';
 import 'common/package_looping_command.dart';
+import 'common/plugin_utils.dart';
 import 'common/process_runner.dart';
 import 'common/repository_package.dart';
 
diff --git a/script/tool/lib/src/lint_android_command.dart b/script/tool/lib/src/lint_android_command.dart
index 607674c80d..eb78ce8916 100644
--- a/script/tool/lib/src/lint_android_command.dart
+++ b/script/tool/lib/src/lint_android_command.dart
@@ -3,12 +3,12 @@
 // found in the LICENSE file.
 
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/plugin_utils.dart';
 import 'package:platform/platform.dart';
 
 import 'common/core.dart';
 import 'common/gradle.dart';
 import 'common/package_looping_command.dart';
+import 'common/plugin_utils.dart';
 import 'common/process_runner.dart';
 import 'common/repository_package.dart';
 
diff --git a/script/tool/lib/src/main.dart b/script/tool/lib/src/main.dart
index 0f73c71e84..078976d973 100644
--- a/script/tool/lib/src/main.dart
+++ b/script/tool/lib/src/main.dart
@@ -7,13 +7,13 @@ import 'dart:io' as io;
 import 'package:args/command_runner.dart';
 import 'package:file/file.dart';
 import 'package:file/local.dart';
-import 'package:flutter_plugin_tools/src/dependabot_check_command.dart';
 
 import 'analyze_command.dart';
 import 'build_examples_command.dart';
 import 'common/core.dart';
 import 'create_all_plugins_app_command.dart';
 import 'custom_test_command.dart';
+import 'dependabot_check_command.dart';
 import 'drive_examples_command.dart';
 import 'federation_safety_check_command.dart';
 import 'firebase_test_lab_command.dart';
diff --git a/script/tool/lib/src/make_deps_path_based_command.dart b/script/tool/lib/src/make_deps_path_based_command.dart
index a09511ad7f..10abcd44ae 100644
--- a/script/tool/lib/src/make_deps_path_based_command.dart
+++ b/script/tool/lib/src/make_deps_path_based_command.dart
@@ -158,10 +158,12 @@ class MakeDepsPathBasedCommand extends PackageCommand {
       ...pubspec.dependencies.keys,
       ...pubspec.devDependencies.keys,
     ];
-    final Iterable<String> packagesToOverride = combinedDependencies
+    final List<String> packagesToOverride = combinedDependencies
         .where(
             (String packageName) => localDependencies.containsKey(packageName))
         .toList();
+    // Sort the combined list to avoid sort_pub_dependencies lint violations.
+    packagesToOverride.sort();
     if (packagesToOverride.isNotEmpty) {
       final String commonBasePath = packagesDir.path;
       // Find the relative path to the common base.
diff --git a/script/tool/lib/src/update_excerpts_command.dart b/script/tool/lib/src/update_excerpts_command.dart
index 320a3c5963..5a59104d4e 100644
--- a/script/tool/lib/src/update_excerpts_command.dart
+++ b/script/tool/lib/src/update_excerpts_command.dart
@@ -5,12 +5,12 @@
 import 'dart:io' as io;
 
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/core.dart';
 import 'package:git/git.dart';
 import 'package:platform/platform.dart';
 import 'package:yaml/yaml.dart';
 import 'package:yaml_edit/yaml_edit.dart';
 
+import 'common/core.dart';
 import 'common/package_looping_command.dart';
 import 'common/process_runner.dart';
 import 'common/repository_package.dart';
diff --git a/script/tool/lib/src/update_release_info_command.dart b/script/tool/lib/src/update_release_info_command.dart
index 465b475eb9..67aa994d96 100644
--- a/script/tool/lib/src/update_release_info_command.dart
+++ b/script/tool/lib/src/update_release_info_command.dart
@@ -4,11 +4,11 @@
 
 import 'package:args/command_runner.dart';
 import 'package:file/file.dart';
-import 'package:flutter_plugin_tools/src/common/core.dart';
 import 'package:git/git.dart';
 import 'package:pub_semver/pub_semver.dart';
 import 'package:yaml_edit/yaml_edit.dart';
 
+import 'common/core.dart';
 import 'common/git_version_finder.dart';
 import 'common/package_looping_command.dart';
 import 'common/package_state_utils.dart';
diff --git a/script/tool/test/make_deps_path_based_command_test.dart b/script/tool/test/make_deps_path_based_command_test.dart
index 7e52dd6bbb..36753e8001 100644
--- a/script/tool/test/make_deps_path_based_command_test.dart
+++ b/script/tool/test/make_deps_path_based_command_test.dart
@@ -184,6 +184,42 @@ ${devDependencies.map((String dep) => '  $dep: ^1.0.0').join('\n')}
         ]));
   });
 
+  test(
+      'alphabetizes overrides from different sectinos to avoid lint warnings in analysis',
+      () async {
+    createFakePackage('a', packagesDir);
+    createFakePackage('b', packagesDir);
+    createFakePackage('c', packagesDir);
+    final RepositoryPackage targetPackage =
+        createFakePackage('target', packagesDir);
+
+    _addDependencies(targetPackage, <String>['a', 'c']);
+    _addDevDependenciesSection(targetPackage, <String>['b']);
+
+    final List<String> output = await runCapturingPrint(runner,
+        <String>['make-deps-path-based', '--target-dependencies=c,a,b']);
+
+    expect(
+        output,
+        containsAllInOrder(<String>[
+          'Rewriting references to: c, a, b...',
+          '  Modified packages/target/pubspec.yaml',
+        ]));
+
+    expect(
+        targetPackage.pubspecFile.readAsLinesSync(),
+        containsAllInOrder(<String>[
+          '# FOR TESTING ONLY. DO NOT MERGE.',
+          'dependency_overrides:',
+          '  a:',
+          '    path: ../a',
+          '  b:',
+          '    path: ../b',
+          '  c:',
+          '    path: ../c',
+        ]));
+  });
+
   // This test case ensures that running CI using this command on an interim
   // PR that itself used this command won't fail on the rewrite step.
   test('running a second time no-ops without failing', () async {